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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015935636.1_cds_XP_016481419.1_72751
CDS Infomation

[gene=LOC107802425] [db_xref=GeneID:107802425] [protein=probable 28S rRNA (cytosine-C(5))-methyltransferase] [protein_id=XP_016481419.1] [location=complement(join(22619..22818,23494..23655,23752..23823,23922..24009,24994..25055,25565..25709,25801..25854,25997..26095,26625..26710,26999..27134,27215..27265,28438..28496,29393..29633))] [gbkey=CDS]
Sequence

ATGGCGTGCAAGAAGCCGCAAGGGAACACTAAACCGGCGGCGAATAAGCCGAACCAGAAG
CGGATGAGCAACGCCGAGCGGTCGGCGTACTTTGCACGTAGAGAAGCCGCCAAGGTTTTG
CGTACTATTCTACAAGGAGACTCTCGGCGTCGAGCCGTCGGGTCCATCAAGTCGCTGGTG
TATAGTCCTTCCGTTAGGAACAAAAAAGCTACCTATGCTTTGGTTTGTCAAACCCTCAAA
TATCTTCCCATTATCAAGGATGTCTTTGACATTGCCAATGTGCTGAGTAGCAAGTGGAAG
AGGCAAGAAGAATTAATGTATATAATCTTGTATGACATTCTTTTTGGCCAGGAGGCTTTA
TTAGCTGGTGATGCAGAAAAAATTCTTCTCCAGCGGAAGGATGTGTTGCAGGCAGCTCTT
GCCAAGCTTTTAGTGCGAAAGAAAGTAAAACATGTCTCAGATTTGATGACTTCTTATAAA
ATCTCAGACCTTCCGAAACCTCGTTATGCTCGTGTAAATACTCTGAAGATGGACGTAGAG
TGTGCCCTGCTCGAATTTAAGAAACAGTATGAGGTCTGTCAGGATGCCATGGTTCCTGAC
CTGTTGATTTTTCCACCAAGGACTGACCTGCATGATCATCCTTTGGTGAAAAATGGAAGT
GTGTTTTTGCAGGGTAAGGCGAGTTCCATGGTTGCAGTTGCTCTTGGGCCTAAACCCGGA
TGGGAGGTCATTGATGCATGTGCAGCACCAGGGAACAAAACTGTTCATCTTGCTGCTCTA
ATGAAGGGAAAAGGAAAGATTATTGCTTGTGAACTTAATATAGAAAGGGTTAAACGTCTG
AAAGACACTGTTAAACTGGCTGGACCAACTAACGTGAAAGTCAAGCATGAGGACTTCTTA
AACTTGAGTCCTGAGGATCCAGCATACTCAAAGGTTCAAGCAATACTTTTAGATCCATCA
TGTTCTGGATCTGGGACAGTTGTTGATAGATTAGATCATCTGCTCCCCTCATATACTGCA
GATTCCTCTGATGTACATAGACAAGAAAAGCTCGCTGCTTTCCAGAAAAAGGCTTTGGAA
CATGCATTATCTTTTCCAGCTGTTGAGAGAGTTGTTTACAGCACATGTTCTATTAACCAA
GTTGAGAATGAAGATGTAATCAACTCTGTTCTGCCTCTTGCTTCTTCTTATGGTTTTGAA
CTGACGACAGTCTTTCCCCAATGGCCTCGCCGAGGTCATCCAGTTTTTGATGGATCTCAA
CATTTGCTGAGAACGGATCTCATAGAGGACAAGGAGGGCTTTTTTATTGCTTTATTTGTT
AGAAAGGGAGCGAGCACTCCAGCCAAGCACAGCAGAGATGTTGCATACACTTTACGAGCT
ATTCAACGAAGGAAGAAAAGAAGAATAAATTCTTTCTTCCACTTCAAAACTTTCGGTTTG
TTCTTGCAGTCCTAG

Peptide Sequence

PEP ID

XP_016481419.1
PEP Infomation

PREDICTED: probable 28S rRNA (cytosine-C(5))-methyltransferase [Nicotiana tabacum]
Sequence

MACKKPQGNTKPAANKPNQKRMSNAERSAYFARREAAKVLRTILQGDSRRRAVGSIKSLV
YSPSVRNKKATYALVCQTLKYLPIIKDVFDIANVLSSKWKRQEELMYIILYDILFGQEAL
LAGDAEKILLQRKDVLQAALAKLLVRKKVKHVSDLMTSYKISDLPKPRYARVNTLKMDVE
CALLEFKKQYEVCQDAMVPDLLIFPPRTDLHDHPLVKNGSVFLQGKASSMVAVALGPKPG
WEVIDACAAPGNKTVHLAALMKGKGKIIACELNIERVKRLKDTVKLAGPTNVKVKHEDFL
NLSPEDPAYSKVQAILLDPSCSGSGTVVDRLDHLLPSYTADSSDVHRQEKLAAFQKKALE
HALSFPAVERVVYSTCSINQVENEDVINSVLPLASSYGFELTTVFPQWPRRGHPVFDGSQ
HLLRTDLIEDKEGFFIALFVRKGASTPAKHSRDVAYTLRAIQRRKKRRINSFFHFKTFGL
FLQS

Transcript Sequence

Gene sequence data has not been registered.